{"id":19,"date":"2012-01-07T23:59:55","date_gmt":"2012-01-07T20:29:55","guid":{"rendered":"http:\/\/profs.hsu.ac.ir\/vaezi\/"},"modified":"2019-11-26T08:21:58","modified_gmt":"2019-11-26T04:51:58","slug":"genomes-databases","status":"publish","type":"page","link":"https:\/\/staff.hsu.ac.ir\/vaezi\/database\/genomes-databases\/","title":{"rendered":"\u067e\u0627\u06cc\u06af\u0627\u0647\u0647\u0627\u06cc \u0698\u0646\u0648\u0645 \u06af\u06cc\u0627\u0647\u06cc"},"content":{"rendered":"<table border=\"0\" cellspacing=\"0\" cellpadding=\"0\">\n<tbody>\n<tr>\n<td dir=\"ltr\" style=\"text-align: left\" valign=\"top\" width=\"331\"><strong>Search<\/strong><\/p>\n<ul>\n<li><span style=\"color: #0000ff\"><a href=\"http:\/\/www.arabidopsis.org\/\" rel=\"nofollow\"><span style=\"color: #0000ff\">TAIR Homepage<\/span><\/a><\/span><\/li>\n<li>\n<div><span style=\"color: #0000ff\"><a href=\"http:\/\/www.arabidopsis.org\/servlets\/mapper\" rel=\"nofollow\"><span style=\"color: #0000ff\">TAIR- Map Viewer<\/span><\/a><\/span><\/div>\n<\/li>\n<li><span style=\"color: #0000ff\"><a href=\"http:\/\/www.ncbi.nlm.nih.gov\/\" rel=\"nofollow\"><span style=\"color: #0000ff\">NCBI HomePage<\/span><\/a><\/span><\/li>\n<li><span style=\"color: #0000ff\"><a href=\"http:\/\/ukcrop.net\/agr\/simple.html\" rel=\"nofollow\"><span style=\"color: #0000ff\">AGR- UK CROPNET<\/span><\/a><\/span><\/li>\n<li><span style=\"color: #0000ff\"><a href=\"http:\/\/www.atted.bio.titech.ac.jp\/\" rel=\"nofollow\"><span style=\"color: #0000ff\">ATTED<\/span><\/a><\/span><\/li>\n<li><span style=\"color: #0000ff\"><a href=\"http:\/\/www.genome.jp\/\" rel=\"nofollow\"><span style=\"color: #0000ff\">GenomeNet<\/span><\/a><\/span><\/li>\n<\/ul>\n<p dir=\"ltr\"><strong>Alignment<\/strong><\/p>\n<ul>\n<li><span style=\"color: #0000ff\"><a href=\"http:\/\/www.ebi.ac.uk\/clustalw\/index.html?\" rel=\"nofollow\"><span style=\"color: #0000ff\">ClustalW<\/span><\/a><\/span><\/li>\n<li><span style=\"color: #0000ff\"><a href=\"http:\/\/bioweb.pasteur.fr\/seqanal\/interfaces\/needle.html\" rel=\"nofollow\"><span style=\"color: #0000ff\">NEEDLE<\/span><\/a><\/span><\/li>\n<li><span style=\"color: #0000ff\"><a href=\"http:\/\/bioweb.pasteur.fr\/seqanal\/alignment\/intro-uk.html\" rel=\"nofollow\"><span style=\"color: #0000ff\">Sequences Alignments and Comparisons<\/span><\/a><\/span><\/li>\n<li><span style=\"color: #0000ff\"><a href=\"http:\/\/genome.cs.mtu.edu\/align\/align.html\" rel=\"nofollow\"><span style=\"color: #0000ff\">Pairwise Sequence Alignment<\/span><\/a><\/span><\/li>\n<li><span style=\"color: #0000ff\"><a href=\"http:\/\/ca.expasy.org\/tools\/sim-prot.html\" rel=\"nofollow\"><span style=\"color: #0000ff\">SIM- Alignment Tool, Protein Sequences<\/span><\/a><\/span><\/li>\n<li><span style=\"color: #0000ff\"><a href=\"http:\/\/www.ch.embnet.org\/software\/LALIGN_form.html\" rel=\"nofollow\"><span style=\"color: #0000ff\">LALIGN- DNA Alignment<\/span><\/a><\/span><\/li>\n<\/ul>\n<p><strong>Blast Search<\/strong><\/p>\n<ul>\n<li><span style=\"color: #0000ff\"><a href=\"http:\/\/ukcrop.net\/perl\/ace\/ncbi_blast\/AGR\" rel=\"nofollow\"><span style=\"color: #0000ff\">BLAST- AGR<\/span><\/a><\/span><\/li>\n<li><span style=\"color: #0000ff\"><a href=\"http:\/\/www.ncbi.nlm.nih.gov\/BLAST\/\" rel=\"nofollow\"><span style=\"color: #0000ff\">BLAST- NCBI<\/span><\/a><\/span><\/li>\n<li><span style=\"color: #0000ff\"><a href=\"http:\/\/www.arabidopsis.org\/Blast\/\" rel=\"nofollow\"><span style=\"color: #0000ff\">BLAST- TAIR<\/span><\/a><\/span><\/li>\n<li><span style=\"color: #0000ff\"><a href=\"http:\/\/www.arabidopsis.org\/wublast\/index2.jsp\" rel=\"nofollow\"><span style=\"color: #0000ff\">WU-BLAST- TAIR<\/span><\/a><\/span><\/li>\n<li><span style=\"color: #0000ff\"><a href=\"http:\/\/atensembl.arabidopsis.info\/Multi\/blastview\" rel=\"nofollow\"><span style=\"color: #0000ff\">BlastView- NASC<\/span><\/a><\/span><\/li>\n<\/ul>\n<p><strong>Protein Tools<\/strong><\/p>\n<ul>\n<li><span style=\"color: #0000ff\"><a href=\"http:\/\/www.bio.gsc.riken.go.jp\/cgi-bin\/DLP\/dlp2.cgi\" rel=\"nofollow\"><span style=\"color: #0000ff\">Domain Linker Prediction<\/span><\/a><\/span><\/li>\n<li><span style=\"color: #0000ff\"><a href=\"http:\/\/www.ebi.ac.uk\/emboss\/transeq\/\" rel=\"nofollow\"><span style=\"color: #0000ff\">EMBOSSTranseq<\/span><\/a><\/span><\/li>\n<li><span style=\"color: #0000ff\"><a href=\"http:\/\/npsa-pbil.ibcp.fr\/cgi-bin\/npsa_automat.pl?page=npsa_gor4.html\" rel=\"nofollow\"><span style=\"color: #0000ff\">GOR4- Secondary Structure Prediction<\/span><\/a><\/span><\/li>\n<li><span style=\"color: #0000ff\"><a href=\"http:\/\/www.dna.affrc.go.jp\/PLACE\/signalscan.html\" rel=\"nofollow\"><span style=\"color: #0000ff\">PLACE Web Signal Scan<\/span><\/a><\/span><\/li>\n<\/ul>\n<p><strong>Books and Downloads:<\/strong><\/p>\n<ul>\n<li><span style=\"color: #0000ff\"><a href=\"http:\/\/www.web-books.com\/MoBio\/Free\/Contents.htm\" rel=\"nofollow\"><span style=\"color: #0000ff\">Molecular Biology Web<\/span><\/a><\/span><\/li>\n<li><span style=\"color: #0000ff\"><a href=\"ftp:\/\/ftp.pasteur.fr\/pub\/GenSoft\/MS-Windows\/\"><span style=\"color: #0000ff\">MS-Windows<\/span><\/a><\/span><\/li>\n<li><span style=\"color: #0000ff\"><a href=\"http:\/\/www.hgvs.org\/mutnomen\/\" rel=\"nofollow\"><span style=\"color: #0000ff\">Mutation Nomenclature<\/span><\/a><\/span><\/li>\n<li><span style=\"color: #0000ff\"><a href=\"http:\/\/oak.ppws.vt.edu\/~sforza\/agro\/agro.html\" rel=\"nofollow\"><span style=\"color: #0000ff\">Pathogenesis of Agrobacterium<\/span><\/a><\/span><\/li>\n<li><span style=\"color: #0000ff\"><a href=\"http:\/\/www.lsic.ucla.edu\/ls3\/tutorials\/gene_cloning.html\" rel=\"nofollow\"><span style=\"color: #0000ff\">UCLA Molecular Biology Tutorials \u2013 Gene Cloning<\/span><\/a><\/span><\/li>\n<li><span style=\"color: #0000ff\"><a href=\"http:\/\/stein.cshl.org\/AcePerl\/\" rel=\"nofollow\"><span style=\"color: #0000ff\">AcePerl<\/span><\/a><\/span><\/li>\n<\/ul>\n<\/td>\n<td width=\"8\"><\/td>\n<td dir=\"ltr\" style=\"text-align: left\" valign=\"top\" width=\"313\"><strong>Genomic Tools<\/strong><\/p>\n<ul>\n<li><span style=\"color: #0000ff\"><a href=\"http:\/\/ukcrop.net\/\" rel=\"nofollow\"><span style=\"color: #0000ff\">UK CROPNET<\/span><\/a><\/span><\/li>\n<li><span style=\"color: #0000ff\"><a href=\"http:\/\/www.hgmp.mrc.ac.uk\/\" rel=\"nofollow\"><span style=\"color: #0000ff\">UK MRC HGMP-RC<\/span><\/a><\/span><\/li>\n<li><span style=\"color: #0000ff\"><a href=\"http:\/\/sbcr.bii.a-star.edu.sg\/emboss\/\" rel=\"nofollow\"><span style=\"color: #0000ff\">EMBOSS<\/span><\/a><\/span><\/li>\n<li><span style=\"color: #0000ff\"><a href=\"http:\/\/www-genome.wi.mit.edu\/cgi-bin\/primer\/primer3_www.cgi\" rel=\"nofollow\"><span style=\"color: #0000ff\">Primer3<\/span><\/a><\/span>\n<ul>\n<li><span style=\"color: #0000ff\"><a href=\"http:\/\/frodo.wi.mit.edu\/cgi-bin\/primer3\/primer3_www_slow.cgi\" rel=\"nofollow\"><span style=\"color: #0000ff\">Primer3-Slow<\/span><\/a><\/span><\/li>\n<\/ul>\n<\/li>\n<li><span style=\"color: #0000ff\"><a href=\"http:\/\/www.changbioscience.com\/res\/\" rel=\"nofollow\"><span style=\"color: #0000ff\">Res (Chang Bioscience)<\/span><\/a><a href=\"http:\/\/xylian.igh.cnrs.fr\/\" rel=\"nofollow\"><span style=\"color: #0000ff\">GENESTREAM Bioinformatics Resource Server<\/span><\/a><\/span>\n<ul>\n<li><span style=\"color: #0000ff\"><a href=\"http:\/\/www.changbioscience.com\/res\/resrc.html\" rel=\"nofollow\"><span style=\"color: #0000ff\">DNA Reverse or Complement<\/span><\/a><\/span><\/li>\n<\/ul>\n<\/li>\n<li><\/li>\n<li><span style=\"color: #0000ff\"><a href=\"http:\/\/ca.expasy.org\/tools\/\" rel=\"nofollow\"><span style=\"color: #0000ff\">ExPASy Proteomic Tools<\/span><\/a><\/span><\/li>\n<li><span style=\"color: #0000ff\"><a href=\"http:\/\/www.dpw.wau.nl\/pv\/PUB\/ggt\/index.htm\" rel=\"nofollow\"><span style=\"color: #0000ff\">GGT graphical genotyping downloadpage<\/span><\/a><\/span><\/li>\n<li><span style=\"color: #0000ff\"><a href=\"http:\/\/www.bioinformatics.org\/SMS\/\" rel=\"nofollow\"><span style=\"color: #0000ff\">The Sequence Manipulation Suite<\/span><\/a><\/span><\/li>\n<\/ul>\n<p><strong>T-DNA Insertions and Mutant lines<\/strong><\/p>\n<ul>\n<li><span style=\"color: #0000ff\"><a href=\"http:\/\/signal.salk.edu\/tdna_FAQs.html\" rel=\"nofollow\"><span style=\"color: #0000ff\">Salk Mutants<\/span><\/a><\/span><\/li>\n<li><span style=\"color: #0000ff\"><a href=\"http:\/\/signal.salk.edu\/pBIN-pROK2.txt-new\" rel=\"nofollow\"><span style=\"color: #0000ff\">pROK2<\/span><\/a><\/span><\/li>\n<li><span style=\"color: #0000ff\"><a style=\"line-height: 19px\" href=\"http:\/\/signal.salk.edu\/tdna_protocols.html\" rel=\"nofollow\"><span style=\"color: #0000ff\">T-DNA Recovery Protocol and Vector Sequence<\/span><\/a><\/span><\/li>\n<li><span style=\"color: #0000ff\"><a style=\"line-height: 19px\" href=\"http:\/\/www.gabi-kat.de\/\" rel=\"nofollow\"><span style=\"color: #0000ff\">GABI-Kat Mutants<\/span><\/a><\/span><\/li>\n<\/ul>\n<p style=\"line-height: 19px\"><strong>Arabidopsis Resources<\/strong><\/p>\n<ul style=\"line-height: 19px\">\n<li><span style=\"color: #0000ff\"><a href=\"http:\/\/www.biosciences.bham.ac.uk\/labs\/kearsey\/qtl_ns\/arab.html\" rel=\"nofollow\"><span style=\"color: #0000ff\">QTL Arabidopsis<\/span><\/a><\/span><\/li>\n<li><span style=\"color: #0000ff\"><a href=\"http:\/\/ukcrop.net\/agr\/\" rel=\"nofollow\"><span style=\"color: #0000ff\">UK CropNet, Arabidopsis Genome Resource (AGR)<\/span><\/a><\/span><\/li>\n<li><span style=\"color: #0000ff\"><a href=\"http:\/\/www.kazusa.or.jp\/kaos\/\" rel=\"nofollow\"><span style=\"color: #0000ff\">KAOS- Clones<\/span><\/a><\/span><\/li>\n<li><span style=\"color: #0000ff\"><a href=\"http:\/\/natural.salk.edu\/naturalvariation\/links.html\" rel=\"nofollow\"><span style=\"color: #0000ff\">QTL Links<\/span><\/a><\/span><\/li>\n<li><span style=\"color: #0000ff\"><a href=\"http:\/\/www.ncbi.nlm.nih.gov\/books\/bv.fcgi?call=bv.View..ShowSection&amp;rid=mcb.chapter.1556\" rel=\"nofollow\"><span style=\"color: #0000ff\">Recombinant DNA and<\/span><\/a><\/span><\/li>\n<li><span style=\"color: #0000ff\"><a href=\"http:\/\/nasc.nott.ac.uk\/new_ri_map.html\" rel=\"nofollow\"><span style=\"color: #0000ff\">RI mapping<\/span><\/a><\/span><\/li>\n<li><span style=\"color: #0000ff\"><a href=\"http:\/\/ukcrop.net\/agr\/simple.html\" rel=\"nofollow\"><span style=\"color: #0000ff\">Arabidopsis Genome<\/span><\/a><\/span><\/li>\n<li><span style=\"color: #0000ff\"><a href=\"http:\/\/arabidopsis.info\/EcoForm\" rel=\"nofollow\"><span style=\"color: #0000ff\">Ecotype Search<\/span><\/a><\/span><\/li>\n<li><span style=\"color: #0000ff\"><a href=\"http:\/\/nasc.nott.ac.uk\/\" rel=\"nofollow\"><span style=\"color: #0000ff\">Nottingham Arabidopsis Stock Centre (NASC)<\/span><\/a><\/span><\/li>\n<li><span style=\"color: #0000ff\"><a href=\"http:\/\/atensembl.arabidopsis.info\/Arabidopsis_thaliana_TIGR\/\" rel=\"nofollow\"><span style=\"color: #0000ff\">Ensembl- NASC<\/span><\/a><\/span><\/li>\n<li><span style=\"color: #0000ff\"><a href=\"http:\/\/www.ncbi.nlm.nih.gov\/mapview\/map_search.cgi?taxid=3702\" rel=\"nofollow\"><span style=\"color: #0000ff\">Entrez- Arabidopsis Genome view<\/span><\/a><\/span><\/li>\n<li><span style=\"color: #0000ff\"><a href=\"http:\/\/rarge.gsc.riken.jp\/genomemap\/chrmap.pl?chr=4&amp;center=15122250&amp;window=10\" rel=\"nofollow\"><span style=\"color: #0000ff\">RARGE \u2013 Arabidopsis thaliana genome map<\/span><\/a><\/span><\/li>\n<li><span style=\"color: #0000ff\"><a href=\"http:\/\/www.tigr.org\/tdb\/e2k1\/ath1\/TandemDups\/TandemGenes.html\" rel=\"nofollow\"><span style=\"color: #0000ff\">Tandemly Duplicated Genes in Arabidopsis<\/span><\/a><\/span><\/li>\n<\/ul>\n<\/td>\n<\/tr>\n<\/tbody>\n<\/table>\n<p>.<\/p>\n","protected":false},"excerpt":{"rendered":"<p>Search TAIR Homepage TAIR- Map Viewer NCBI HomePage AGR- UK CROPNET ATTED GenomeNet Alignment ClustalW NEEDLE Sequences Alignments and Comparisons Pairwise Sequence Alignment SIM- Alignment Tool, Protein Sequences LALIGN- DNA Alignment Blast Search BLAST- AGR BLAST- NCBI BLAST- TAIR WU-BLAST- TAIR BlastView- NASC Protein Tools Domain Linker Prediction EMBOSSTranseq GOR4- Secondary Structure Prediction PLACE Web &hellip; <a href=\"https:\/\/staff.hsu.ac.ir\/vaezi\/database\/genomes-databases\/\" class=\"more-link\">Continue reading <span class=\"screen-reader-text\">\u067e\u0627\u06cc\u06af\u0627\u0647\u0647\u0627\u06cc \u0698\u0646\u0648\u0645 \u06af\u06cc\u0627\u0647\u06cc<\/span> <span class=\"meta-nav\">&rarr;<\/span><\/a><\/p>\n","protected":false},"author":9,"featured_media":0,"parent":281,"menu_order":0,"comment_status":"closed","ping_status":"closed","template":"","meta":{"footnotes":"","_links_to":"","_links_to_target":""},"class_list":["post-19","page","type-page","status-publish","hentry"],"_links":{"self":[{"href":"https:\/\/staff.hsu.ac.ir\/vaezi\/wp-json\/wp\/v2\/pages\/19","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/staff.hsu.ac.ir\/vaezi\/wp-json\/wp\/v2\/pages"}],"about":[{"href":"https:\/\/staff.hsu.ac.ir\/vaezi\/wp-json\/wp\/v2\/types\/page"}],"author":[{"embeddable":true,"href":"https:\/\/staff.hsu.ac.ir\/vaezi\/wp-json\/wp\/v2\/users\/9"}],"replies":[{"embeddable":true,"href":"https:\/\/staff.hsu.ac.ir\/vaezi\/wp-json\/wp\/v2\/comments?post=19"}],"version-history":[{"count":1,"href":"https:\/\/staff.hsu.ac.ir\/vaezi\/wp-json\/wp\/v2\/pages\/19\/revisions"}],"predecessor-version":[{"id":2836,"href":"https:\/\/staff.hsu.ac.ir\/vaezi\/wp-json\/wp\/v2\/pages\/19\/revisions\/2836"}],"up":[{"embeddable":true,"href":"https:\/\/staff.hsu.ac.ir\/vaezi\/wp-json\/wp\/v2\/pages\/281"}],"wp:attachment":[{"href":"https:\/\/staff.hsu.ac.ir\/vaezi\/wp-json\/wp\/v2\/media?parent=19"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}